Open Source Software I've developed or contributed to

• 🦚 AmpSeeker 🦚

  A scalable, reproducible snakemake pipeline to analyse Illumina amplicon sequencing data. Builds a webpage to conveniently explore the results

• 🌍 The malaria vector selection atlas 🌍

  A web resource of selection signals in An. gambiae s.l mosquitoes from phase 3 of the Anopheles 1000 genomes project

• 🦕 RNA-Seq-Pop 🦕

  A reproducible snakemake pipeline to analyse RNA-Seq data from any organism. Calls variants and performs population genomic analyses as well as typical transcriptomic analyses

• 🦟 malariagen_data 🦟

  A python package to access and analyse data from the Anopheles 1000 genomes project in the cloud

• 🌺 AnoExpress 🌺

  A python package to load and explore data from a meta-analysis of transcriptomic studies into insecticide resistance in Anopheles mosquitoes

• 🧬 AnoPrimer 🧬

  A python package to design primers in Anopheles gambiae and funestus whilst considering genetic variation.

• 🦴 ancIBD 🦴

  A python package to identify segments of identity by descent in ancient DNA